rs38171262 SNP Detail

Summary

• ID
  rs38171262
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128049495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTTGCATC CCATCTTCCT
  CTTCTATTGA CTTTTAAACG TCGGAGCAAA AATGTTGAGG GAATTTCCTC TAGAGAGGTT
  GTGCCTGTTC TGCTAATGCT TCGGGTGTGG ATAATGAAGA GGGAATGGTT TCAGAACTGG
  GTCTCTGAAG CACCTATAGA CTTGCGCCTT CTTATTCCCT GCCCTCATCA TGACCACTGA
  R
  CTGTATTCCT GGCCCTTTTT AAGATATGGT TGTTTGCTTG TTTTAATTTG TAGACGAGGT
  CTCACGAAGT TGACATTGGA ACTCATACAC ACTGTAGCGT AGGGCAGCAT TTGAACTGTG
  GACCTTTCTG GCGGAGCCTC CTGAGTCTGG ATTATAGGTA TGTATCGCCA GTGGAAATAC
  CTGCATTATT TTATACTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50948619	NES14143206	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	G	A	G	G	G	G		A	G	A	A		G
ss147738332	ENSMUSSNP2806765	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						G
ss323532337	CHEV_10_127650682	CHEVERUD	SCREENING_POP	f	SNP												A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38171262					SNP	A	A	A	A	A	G	A	G	G	G	G	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50948619	NES14143206	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128049495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2387	CpG island 2387	1572 bp distal
Cpgi2388	CpG island 2388	162 bp distal
Rr213664	regulatory region 213664	1306 bp proximal
Rr224447	regulatory region 224447	1294 bp distal
Rr224448	regulatory region 224448	within coordinates
Rr402345	regulatory region 402345	1615 bp downstream
Rr402346	regulatory region 402346	522 bp downstream
Spryd4	SPRY domain containing 4	1832 bp upstream
Tssr99849	transcription start site region 99849	1851 bp upstream
Tssr99850	transcription start site region 99850	1803 bp upstream