rs38171831 SNP Detail

Summary

• ID
  rs38171831
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:56675493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTGGTAGAT GCTACTCTTT CCTTGTGTAT CGGTAACTCA
  GGTTCGCCCT TTGCTTTTGA GTCAGAATAA GTAGATGAAC TGGATGAAAA GTGAGGAAAC
  Y
  CAGGCTGAAA GGAAGGCTCT CCTTGCATTT CAATACAACT ATTCCACAAG TGAGACATGT
  CCCCGCGGTT TTGAGTAATA GAGGTTATAA TGAAATTCAC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51254044	NES14273726	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38171831					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254044	NES14273726	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:56675493 () rs orientation: forward

Symbol	Name	Function Class
Gm70103	predicted gene, 70103	within coordinates
Hsfy2	heat shock transcription factor, Y-linked 2	within coordinates
Tssr11733	transcription start site region 11733	1074 bp downstream
Tssr11734	transcription start site region 11734	1091 bp downstream
Tssr11735	transcription start site region 11735	1096 bp downstream
Tssr11736	transcription start site region 11736	1121 bp downstream
Tssr11737	transcription start site region 11737	1127 bp downstream