rs38172031 SNP Detail

Summary

• ID
  rs38172031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:78002675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTTGAT ACCAGAAGAA
  TAAAGGAGAT CCTAGCAGAG AGAAACAAGC GATGTTCACT CCAGGTGGCT TCTTTGATCA
  CTAAATATTA TACAGTCTCT TCCCTTTTAT CTAAGCCAAC CCACAGACCA CCAGGAAGCC
  TGTGTTTTCT CTGCGATACT GCTTGTGTGA TCACAGATTG TTTCTTCGCT GTCTTACCTG
  S
  CCTGCTCTAG CATTTACGTT TTGTCCATTC AAAGCCATAT CTTACCCAAC ACTGTCATTC
  CAGGTGAGTG TTTTTCATGT GTGATCTCTA GACCAGGGGC ATTAGCATTT CACACAGACT
  TGTTAGGCTT GCATCTTCAT AACCCACCTT CTGAGTCCTA CTGTCTCAGA AGTGGAAGGG
  GTGGGGCCTA GCACTCTGTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51286146	NES14517139	PERLEGEN	MM_PANEL2	f	SNP	G		C	G	C	G	C	G	C	C	C	C	C	G	C	C
ss144739046	ENSMUSSNP5175477	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38172031					SNP	G	G	C	G	C	G	C	G	C	C	C	C	C	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51286146	NES14517139	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:78002675 () rs orientation: forward

Symbol	Name	Function Class
Gm70314	predicted gene, 70314	1501 bp downstream