rs38173285 SNP Detail

Summary

• ID
  rs38173285
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:45505830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGTTTTC AAGACAGGTT
  TTCTCTGTAG CCTGGCTGTC CTGCAACTCA CTTTGTAGAC CAGGCTGACC TGGAACTCAG
  AAATCCGCCT GCCTCCGCCT CCCGAGTGCT GGGATTAAAG GCGTGCGCCA CCACCCCTGG
  CACAGTCATG CAGTTTAAAA TAGCTGACAT TCGCAAAACT ATCCATCTGT GACAGCCAAC
  Y
  CTTTGAAGCT TCTCTCAGCG TGCTCCTTTT GAATTTTCAC AGTGCTATAT TGTGCCTGTC
  AGCACTGTGC ACTGTTGAAG GAGGGCATCT TGTTACCTTT AATAACTCTG CAGTCTTTGG
  ATGAACCACT TAGTTAGGAT TTCATTGCTG TGAAGAGACA CAGTGACCAC GGCAGCTCTT
  CTAACAGAAA GCGTTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss50533733	NES14088157	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38173285					SNP	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50533733	NES14088157	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:45505830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20295	CpG island 20295	1153 bp distal
Fat1	FAT atypical cadherin 1	536 bp downstream
Rr662830	regulatory region 662830	380 bp distal
Tssr77124	transcription start site region 77124	1860 bp downstream
Tssr77125	transcription start site region 77125	1243 bp downstream
Tssr77126	transcription start site region 77126	1136 bp downstream