rs38174047 SNP Detail

Summary

• ID
  rs38174047
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48651411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCACC AGCTGTAGTC TCAGGACTCG
  S
  ACTATATTGG AGGATAGCTC ATTTA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51662130	NES14829777	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	G	C	G	G	C		G	C
ss133165769	ENSMUSSNP5814006	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss321794330	CHEV_6_48624476	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs38174047					SNP	C	G	G	G	C	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51662130	NES14829777	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48651411 () rs orientation: forward

Symbol	Name	Function Class
Gimap9	GTPase, IMAP family member 9	1673 bp upstream
Gm46958	predicted gene, 46958	1355 bp downstream
Rr629719	regulatory region 629719	237 bp proximal
Rr629720	regulatory region 629720	1171 bp proximal
Tssr56160	transcription start site region 56160	322 bp upstream
Tssr56161	transcription start site region 56161	724 bp upstream
Tssr56162	transcription start site region 56162	1637 bp upstream
Tssr56163	transcription start site region 56163	1683 bp upstream
Tssr56164	transcription start site region 56164	1716 bp upstream
Tssr56165	transcription start site region 56165	1931 bp upstream