rs38174404 SNP Detail

Summary

• ID
  rs38174404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:81121017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATTCTTGG TTCTAAATGC AATGGTGTTG GTGACTGCTC
  TTTCTTCAAA GATCACAGCC CCCAGTCACT GAACACTTGG ACCACTATGT ACAGGAAATA
  M
  TAATTAGTGC CTGAATAACA AAAGAAATGC TGAATGTTTA CTCTTCCTCC TGGATGCTAA
  CAACGTGTTA GTAGATTTTA GGTTGAGGAG CCCTCTTATA                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51970017	NES14987263	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38174404					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51970017	NES14987263	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:81121017 () rs orientation: forward

Symbol	Name	Function Class
Gm30605	predicted gene, 30605	within coordinates
Tssr81895	transcription start site region 81895	669 bp downstream
Tssr81896	transcription start site region 81896	714 bp downstream
Tssr81897	transcription start site region 81897	726 bp downstream
Tssr81898	transcription start site region 81898	741 bp downstream
Tssr81899	transcription start site region 81899	764 bp downstream
Tssr81900	transcription start site region 81900	789 bp downstream
Tssr81901	transcription start site region 81901	812 bp downstream
Tssr81902	transcription start site region 81902	826 bp downstream
Tssr81903	transcription start site region 81903	849 bp downstream