rs38175389 SNP Detail

Summary

• ID
  rs38175389
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:28907455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATACCACAG GCACTATGGG ATTTATAGGC AGACTCTGAA
  CTCTTGACTG TTCATGATTT CAGGTCAGCA AGGTACCCAC TGCTTAAAAT GTCCCACTCA
  M
  GTAATGGACT GCCCCTCCTC GCCCTGAGTC CCCCTCATAT TGGAACCAGC TCTGCTTCTG
  CAAACCTCTA CCAGCTGAAT TGTTGCCTTC CTTAGGAGCT                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50836123	NES14188928	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	CAST/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38175389					SNP	C	C	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50836123	NES14188928	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:28907455 () rs orientation: forward

Symbol	Name	Function Class
Gm9824	predicted pseudogene 9824	771 bp downstream
Gm30619	predicted gene, 30619	672 bp downstream
Gm68174	predicted gene, 68174	151 bp downstream
Rr429457	regulatory region 429457	1350 bp distal
Rr429458	regulatory region 429458	1242 bp distal
Tssr92858	transcription start site region 92858	1341 bp downstream
Tssr92859	transcription start site region 92859	698 bp downstream