rs38177139 SNP Detail

Summary

• ID
  rs38177139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGACTCAG AACCCTCCTT CCTCCTGCTT CAAATAGAAT
  GAATTTATGC ATAGCAAGTC CTCTAGAAAC AAATCTAATC TATTTTTTTT TTCAGGAAAA
  Y
  ATCCCAGCTG GTACTCTGTT TAAATGTAAT ACATATTTAT CAATAGACTA ATCTAGGAGG
  TAAAGCAGGT GGAGGGGTCA GGCTGAATAG CCAATACCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51417881	NES13721940	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C		T	C	C	T		C
ss321948812	CHEV_6_129280831	CHEVERUD	SCREENING_POP	f	SNP								C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38177139					SNP	C	C	C	C	C	C	C	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51417881	NES13721940	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307776 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	925 bp downstream
Tssr63595	transcription start site region 63595	973 bp downstream
Tssr63596	transcription start site region 63596	992 bp downstream