rs38178448 SNP Detail

Summary

• ID
  rs38178448
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:72577179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTCCTG AGTGCTGAGA
  CTAAAGCTGT GAACACTTGG CCTTGGGCAA TGATGTTTAA TGAGCAGATT TACTGGACAT
  AGTGGCACAT TCCTGTGATC CCAGCGCTGG GGAGGAAAAG ACAGGTGGAT CTCTACATAG
  GGAGTTCCAG CCCAGTTAGG GCTACATGTG TAGTGAAACC GTGTGTCTTA AAAAACACGA
  R
  TCAATAAAAT CAAAGAAAGT AAGTAAATAA AGGAGGAAAG GAAGTAAAAG ACTGGGAGAA
  AACAACAAAT CCCAGGTCTT GTGTTGACCG TGCATTCCAG TTTGGTTCTG TGAGGTTCCC
  GGCACACCAA CCTTCCTCCT TTTCTGAGGC TGGTGCTGTG ACCTCTCAGA GTAGCAGCCT
  CTGAGCAGCT CTGCCTGCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51695526	NES14820259	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38178448					SNP	A	A	A	A	A	A	G	A	A	G	G	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51695526	NES14820259	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:72577179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17548	CpG island 17548	1226 bp distal
Elmod3	ELMO/CED-12 domain containing 3	1783 bp upstream
Retsat	retinol saturase (all trans retinol 13,14 reductase)	Intron
Rr399707	regulatory region 399707	1566 bp downstream
Rr632239	regulatory region 632239	1865 bp distal
Rr632240	regulatory region 632240	1558 bp distal
Rr632241	regulatory region 632241	1715 bp proximal
Tssr57150	transcription start site region 57150	1587 bp downstream
Tssr61470	transcription start site region 61470	1828 bp upstream
Tssr61471	transcription start site region 61471	1772 bp upstream