rs38178504 SNP Detail

Summary

• ID
  rs38178504
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:23115108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCAGA TTAGGTAGAT
  GTGTGATCTC TAAGCACCTC CTCCTCACAA AAGGTCTGGA TACTGGGACC CTTATGATGG
  AAGAGTAAGA GTTTGGGAAT GTTTATTGGT GGGGGAGCTT TTTAAGATGG AGCTGGGGAG
  ACGATATTAT ATTTGCAGGG TTTTCTTTTT CTTTTTTTCC TCTTAAGCAT GGCACGTGTG
  K
  TATCAATGAA GAAAATTGTC GCTGAGGTAG AGGTGACATG GGAGAGGGAA TAGAGTTAAG
  TCTTCACGAG AGCCTGGTCT GCTTTGTAGA ATAGCTTTGT GCATATAATC TCATTTAATC
  AGTGGAAAAA CATCCCGAGA CTTGTGTTAC TACCACATGC TTGCACAGAA GTAAAAATCA
  AGTTACAGTG GACTAAGGAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51994670	NES15009128	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38178504					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51994670	NES15009128	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:23115108 () rs orientation: forward

Symbol	Name	Function Class
Gm68239	predicted gene, 68239	552 bp upstream
Rr675323	regulatory region 675323	457 bp proximal
Rr675324	regulatory region 675324	563 bp proximal