rs38178643 SNP Detail

Summary

• ID
  rs38178643
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126600987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTAACTT TCTGTAACTC
  CAGCTCCAAG GATCTAGCGC CCTCTTCTGG CCTCCGTGGG TACCCACAAA CTGGTCTACA
  TACCCACAGA CATACACATA TTCATGAAAT TGAAAAGAAT TTTTTAAATA AATAAATGAA
  AGAAGAAATG ACAAATTTTA TCACATATGA AATAAAAGAA AAAAATAATT AAGGACACAA
  R
  TAAAGCTACT ACTACTATTT ACTAAGAAAG AAAACAACAC AGCAGGAAAT GAGCAGCTCA
  GCTCATACAG TAAGAGGTGA CTTGTGTTTC ACTCAGCGGA TATCAGGATC ACTAAGGCCA
  GGAGAAACAG ACTAAAAAAG CCGTGCATGG GACAGTTTGA TATTATCCAT CAAAAATGGA
  AATGTGAATA TTTTTCATCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50944183	NES14266447	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38178643					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944183	NES14266447	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126600987 () rs orientation: forward

Symbol	Name	Function Class
Rr213450	regulatory region 213450	within coordinates
Rr221937	regulatory region 221937	88 bp distal
Rr226427	regulatory region 226427	1187 bp distal
Rr385452	regulatory region 385452	within coordinates