rs38180073 SNP Detail

Summary

• ID
  rs38180073
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45315650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGACTCT CACAGGGCGG
  GGCTGCTGTC CTTCTGTGTG AGTGTGTGTT GCTGGGCTCC GGAAGCTCGG GAGAGCTGCG
  TGAGTGCTTT TAAGCCATCC AGCCAGGGCT GGTCTCTGCT CTTACCACTT AGCAGGGAGT
  GGCTGGCTCT CCGATGGTAC CAGCAAACAA AAGGCTAATG CCTGCCATTT ATCAAGCAGT
  R
  CAGAAACAAT GGTACCCACC ACTGTCCTAG GCCATATTCT GAAGTGCCTA TCTCAGTCCC
  CACAACCTCC CAGAGTCCTG TGCCCTGCCC ACTGTATAGA TGACAAGATA GACATGGAGA
  GATAAACAAA TCGGCAATGG AAAGGTAAGC AAATGACAAA GGCAAGTGGT GAGTGCCAGT
  GTCCTGACAT TGATGGAGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52013354	NES15030299	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38180073					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013354	NES15030299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45315650 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195107	regulatory region 195107	951 bp proximal
Rr206351	regulatory region 206351	1150 bp proximal
Rr209195	regulatory region 209195	351 bp proximal
Tssr84783	transcription start site region 84783	1778 bp downstream
Tssr84784	transcription start site region 84784	1726 bp downstream
Tssr84785	transcription start site region 84785	1194 bp downstream
Tssr84786	transcription start site region 84786	1163 bp downstream
Tssr84787	transcription start site region 84787	1142 bp downstream
Tssr84788	transcription start site region 84788	1111 bp downstream
Tssr84789	transcription start site region 84789	1084 bp downstream
Tssr84790	transcription start site region 84790	1583 bp upstream
Tssr84791	transcription start site region 84791	1714 bp upstream
Tssr84792	transcription start site region 84792	1762 bp upstream