rs38181598 SNP Detail

Summary

• ID
  rs38181598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44888583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGGTC CTTGGAATAT
  GTGGGTGCCA GGGACACAAT GGGTTCCTCG CAGGTGTCCA TAGCTCAGGC AGGGCGCACA
  GGGGCTTCTG ATGGACTTCC ACTCACGTGG GTCCTGGGAC TTCAAGGTTG TTTCTGCAGA
  GTTCAACCTC ACAGACACTC TGACCTCACT GGCTACTGGC TCCGCCCCCT GCACCCTGTG
  R
  TCTTCTGCTT AGCACCCATT AGCCTCGAGC CACCGCGCTG TCTCTGCCTC TCTGTCTCTG
  TCTCTCTGGG CCTTTGCGGT CTCTGTCCTG TGTGTCTCTT TCCCTGGGTC TCTCTCTTTG
  CTCTCTTTCT TCTAGAGCAG GTGCTCCGAT GTGCTTGGGG GCCAGGGTTG GACCCCTGGG
  GAAGTGAAAG GGCTGCAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51480358	NES13971439	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38181598					SNP	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51480358	NES13971439	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44888583 () rs orientation: forward

Symbol	Name	Function Class
Cd37	CD37 antigen	44 bp upstream
Cpgi19038	CpG island 19038	1411 bp proximal
Rr380753	regulatory region 380753	within coordinates
Slc6a16	solute carrier family 6, member 16	1926 bp upstream
Tssr66503	transcription start site region 66503	1915 bp upstream
Tssr66504	transcription start site region 66504	1950 bp upstream
Tssr72351	transcription start site region 72351	403 bp upstream
Tssr72352	transcription start site region 72352	295 bp upstream
Tssr72353	transcription start site region 72353	93 bp upstream
Tssr72354	transcription start site region 72354	56 bp upstream
Tssr72355	transcription start site region 72355	26 bp upstream
Tssr72356	transcription start site region 72356	119 bp downstream
Tssr72357	transcription start site region 72357	129 bp downstream
Tssr72358	transcription start site region 72358	145 bp downstream
Tssr72359	transcription start site region 72359	179 bp downstream
Tssr72360	transcription start site region 72360	216 bp downstream
Tssr72361	transcription start site region 72361	233 bp downstream