rs38181668 SNP Detail

Summary

• ID
  rs38181668
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:129956120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAAATCA GTAATTCTGT
  AAGATCATTT ATCCATTTAA ATAATATTAA TTTATGAAAG TTTATCTTCA TATTGATATC
  CAGGAAAATT TCCTAATAGA GTGGAAGCAA TCACAGCTCT CTGATCCTTG CTGTTCCAGA
  GACAGCTGCA TCTTTTCATG CAGTGCCAGC CTCATCCTAT AGAAAACAAT GGTTAAGGTC
  K
  GTGTGAATGG ATTTGGCCTT ATTTGGTGCC AGGGCTGCCT TCTGCTCTGC AGTTGGCAAA
  GTGGAGATTG TTGCCTTCAT TGACCTCAAC TACCTGGTCT ACATGTTCTA GTATGAGTCT
  ACCCATGGCA AGTTCAATGG CATGGTCAAG GCTGAGAATG GGAACCTTGT CATCAACAGG
  AAACCCATTA CTACCTTCTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50953125	NES14137384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T		G	T	T	G		T
ss323544193	CHEV_10_129557307	CHEVERUD	SCREENING_POP	f	SNP											T					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38181668					SNP	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50953125	NES14137384	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:129956120 () rs orientation: forward

Symbol	Name	Function Class
Gm5181	predicted gene 5181	within coordinates