rs38188534 SNP Detail

Summary

• ID
  rs38188534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:11348337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATGTTAT ACAGTAATAA
  TGAAGAAAAG ATATGAAGAT GAATACATGT GAAAATGATT TCATTATTAA AAATGGAAAA
  TGTAGGTGAA ACATCACAGG TATTAGAAGC TAAGGCTCTA CATTTTATAG TATAGGAAAG
  AACAAAATGT AACTGTGTCT TTAGAGCTTG AGATGTCTTC TAATCTATTT TTCAGTCTGG
  R
  ATGTATACCT ACAGTTGTGT TTTTTTTGTG ATAATTGATT GAGGTACACA TGCTTTAATC
  CATCTGCAGT ATTAGCACCA AAACTATATC TCAAGCTTTG AGTTTGTTCA AAGAGAGAAT
  CTAAACTGAT TTTAAAAATG CCATTCTCAA AGGTTTTCCA CATTCCTATG CGAATGGATT
  GTATAGTAAA AATATTGTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50596014	NES13637792	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38188534					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50596014	NES13637792	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:11348337 () rs orientation: forward

Symbol	Name	Function Class
Ms4ac	membrane-spanning 4-domains, subfamily A cluster	within coordinates
Rr544325	regulatory region 544325	269 bp proximal
Tssr155162	transcription start site region 155162	1558 bp upstream
Tssr155163	transcription start site region 155163	1568 bp upstream
Tssr155164	transcription start site region 155164	1590 bp upstream
Tssr155165	transcription start site region 155165	1684 bp upstream
Tssr155166	transcription start site region 155166	1722 bp upstream
Tssr158339	transcription start site region 158339	1269 bp downstream
Tssr158340	transcription start site region 158340	1376 bp downstream
Tssr158341	transcription start site region 158341	1403 bp downstream
Tssr158342	transcription start site region 158342	1952 bp downstream