rs38188766 SNP Detail

Summary

• ID
  rs38188766
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:53251050 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC AGCTTGGATG TTGGCCATCC
  R
  TGTAGAAGAT GTAATGAGAA AGACC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52017510	NES15035602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	G	A	G		A	G	A		A
ss322963138	CHEV_9_53147855	CHEVERUD	SCREENING_POP	f	SNP									A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38188766					SNP	A	A	A	A	G	G	A	G	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52017510	NES15035602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:53251050 () rs orientation: forward

Symbol	Name	Function Class
Exph5	exophilin 5	within coordinates
Rr679004	regulatory region 679004	648 bp proximal
Tssr85124	transcription start site region 85124	881 bp upstream
Tssr85125	transcription start site region 85125	1310 bp upstream
Tssr85126	transcription start site region 85126	1332 bp upstream
Tssr85127	transcription start site region 85127	1459 bp upstream
Tssr85128	transcription start site region 85128	1477 bp upstream
Tssr85129	transcription start site region 85129	1504 bp upstream
Tssr85130	transcription start site region 85130	1591 bp upstream