rs38192498 SNP Detail

Summary

• ID
  rs38192498
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109708438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACATTCC GGGTAAGACA
  CTGGTTCTGG GGAGTCTGCT CTTGCCGAGC AGTTGGTACC TGGAACATTC TAGGGCCTGC
  CCTTCCTTGG GTTTCCATGT TGCCAGCTCC CAGGGCTAGG CTTAAAGACG TACCCATTGT
  TGGTGCTGAA GGGCTAGGCC CGTACGGGAG GTCATTTTAG AGTGGATGTA TCCAGGGTCT
  M
  ATATACTATC TGGGGTGTGA TGAGCACCAG GTTTCATGGT GGCTCTCTTT CCAAAAGGAT
  CTTTACCTCA AAGGACTCCA GAGGCTACAT CATTGTCTTG GAACTGGTCA GTGGCTGGAG
  CTCTCTCCAG GACAAGTGCT TGGAGGAAGA ACCTGGACAA GCTTCCCTCC CCATACTGTT
  GACTGGATCT TGTAGCTACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss51052585	NES14374019	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs38192498					SNP	A	A	A	A	A	C	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51052585	NES14374019	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109708438 () rs orientation: forward

Symbol	Name	Function Class
Gm54371	predicted gene, 54371	1154 bp downstream
Mir369	microRNA 369	1414 bp upstream
Mir377	microRNA 377	1427 bp downstream
Mir409	microRNA 409	1154 bp upstream
Mir410	microRNA 410	1711 bp upstream
Mir412	microRNA 412	1285 bp upstream
Mir541	microRNA 541	405 bp upstream
Mirc7	microRNA cluster 7, including Mir382 through Mir3072	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc46	microRNA cluster 46, including Mir409 through Mir410	1154 bp proximal
Mirg	miRNA containing gene	within coordinates
Tssr115183	transcription start site region 115183	352 bp downstream
Tssr115184	transcription start site region 115184	1783 bp upstream
Tssr117762	transcription start site region 117762	382 bp upstream