rs38200019 SNP Detail

Summary

• ID
  rs38200019
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:126681162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATATGTA CGCATCTGAC
  CCAAAGGGGG GGGGGGGGGG GAGGGAGTAA CTTGGATGTA TACATTTCAC TAAAAAAAAA
  AAAAAAAAAA AAATTAGCCA ATGCTTAGTG CACTAAAAGA TACCTCCGGT GACAAAAGGG
  CGCAATTCCG CATATTTAAC CTAAGAGTCT GCAAATGGTT CTAAAGACTT CCAAATCTCC
  K
  CCCTAGGATA GTTTATTTCT CTCTGGTAGC ATGGAGGCCA CCAGAACAGG GGAGGAGGGG
  AGATAATTGG GCAGTGGCAT AACTCCTTTC TCAGCTGGCA ACCTTTTAAA GCCTATTAAA
  TCTAACCGGC AGTTGGCCTC TCCGTACCTC CTCCGGCTGA TGTCTGCTGC AGACTCCCCA
  GCCTGTTTTG ACCGGCTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss50943625	NES14265090	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	G	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38200019					SNP	T	T	T	T	G	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50943625	NES14265090	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:126681162 () rs orientation: forward

Symbol	Name	Function Class
Gm66841	predicted gene, 66841	626 bp upstream
Rr440688	regulatory region 440688	245 bp distal
Rr440689	regulatory region 440689	392 bp distal
Rr440690	regulatory region 440690	136 bp proximal