rs38202277 SNP Detail

Summary

• ID
  rs38202277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8058376 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATCTAGCA AAATCAATCC
  ATAATCTCTA TTTATTTGTT GAAAACGTTG ATCTTAACCA AGTCAGTAGT AGTAACACCT
  CTTGGATCCA AAATGTGGAT TCCAATTATC AAGTCAGAAT CCAAATTCAA GAAAAACTAC
  AGCAGCTCAG GACACAAATT CAGAATATAG ACATTCAGCA GCTTGCTGCA GAGGTAAAAC
  R
  ACAGATGGAC GCTATTGATG TCACAATGCA TTTAGATCAA TTGAGAACTG CAATTCTATT
  CCAAAGAATA AGTGACATTA TTGACCGTGT CAAATACTTT GTTATGAATC TTATTGAAGA
  TTTTAAAGTA ACTGAGAAAA TCAATACTTT TAGAGTTATA GTCCGTGAGC TAATTGAGAA
  ATATGAAGTA GACCAACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50958147	NES14429013	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38202277					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50958147	NES14429013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8058376 () rs orientation: forward

Symbol	Name	Function Class
Apob	apolipoprotein B	within coordinates
Tssr3782	transcription start site region 3782	320 bp upstream
Tssr112630	transcription start site region 112630	1984 bp downstream
Tssr112631	transcription start site region 112631	1747 bp downstream
Tssr112632	transcription start site region 112632	1716 bp downstream
Tssr112633	transcription start site region 112633	1640 bp downstream
Tssr112634	transcription start site region 112634	1495 bp downstream
Tssr112635	transcription start site region 112635	1409 bp downstream
Tssr112636	transcription start site region 112636	944 bp downstream
Tssr112637	transcription start site region 112637	864 bp downstream
Tssr112638	transcription start site region 112638	799 bp downstream
Tssr112639	transcription start site region 112639	557 bp downstream
Tssr112640	transcription start site region 112640	515 bp downstream
Tssr112641	transcription start site region 112641	463 bp downstream
Tssr112642	transcription start site region 112642	389 bp downstream
Tssr112643	transcription start site region 112643	300 bp downstream
Tssr112644	transcription start site region 112644	86 bp downstream
Tssr112645	transcription start site region 112645	6 bp upstream
Tssr112646	transcription start site region 112646	32 bp upstream
Tssr112647	transcription start site region 112647	206 bp upstream
Tssr112648	transcription start site region 112648	218 bp upstream
Tssr112649	transcription start site region 112649	710 bp upstream
Tssr112650	transcription start site region 112650	769 bp upstream
Tssr112651	transcription start site region 112651	840 bp upstream
Tssr112652	transcription start site region 112652	864 bp upstream
Tssr112653	transcription start site region 112653	891 bp upstream
Tssr112654	transcription start site region 112654	907 bp upstream
Tssr112655	transcription start site region 112655	925 bp upstream
Tssr112656	transcription start site region 112656	947 bp upstream
Tssr112657	transcription start site region 112657	962 bp upstream
Tssr112658	transcription start site region 112658	995 bp upstream
Tssr112659	transcription start site region 112659	1048 bp upstream
Tssr112660	transcription start site region 112660	1200 bp upstream
Tssr112661	transcription start site region 112661	1431 bp upstream
Tssr112662	transcription start site region 112662	1675 bp upstream
Tssr112663	transcription start site region 112663	1910 bp upstream
Tssr112664	transcription start site region 112664	1935 bp upstream