rs38203692 SNP Detail

Summary

• ID
  rs38203692
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44149535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGACCAGGAT GCGAGAGAGG TTAAGACAGA AATCTGGTGG
  CTGGCCACGG TAAGCATCAC ACAGCCCATC CAGTAGTGGG AGTCCACAGC GATGGTGACA
  K
  GGACTAGACC ATGACTGAGC CTCCCCTTCT CTCTTCAGGC TGTTTCCCTT GCAATTTGTG
  CAGTTGTTTG TGCATGATGA GAGCCGCCAG CAGCTCAAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51891396	NES14911133	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38203692					SNP	T	T	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891396	NES14911133	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44149535 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18970	CpG island 18970	within coordinates
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Gm44646	predicted gene 44646	1578 bp upstream
Mybpc2	myosin binding protein C, fast-type	1588 bp downstream
Rr646111	regulatory region 646111	1462 bp proximal
Rr646112	regulatory region 646112	1589 bp proximal
Rr646113	regulatory region 646113	1797 bp proximal