rs38204570 SNP Detail

Summary

• ID
  rs38204570
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58808491 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAATAA CCAAGAAATT
  CAAAGGATGT ACCCTAAATA CCAACAGGTG AAAAATTTTG AATACTAGAA CAGCAAAGTG
  CTGCTTAACA GTTATCAAAT GAAAGAGCAA GGCGTATTTA CATTCTCTGC ATATTCAGCG
  TATTCAGCAA GGCATATTTA CATTCTCTGC ATATTCAGCG TAACGCTTTA TGAAATCTCA
  Y
  GCTTCTACAC TCAAAACACT ATGCCCACAG TTCCCTCCCA TGTAAAAAAA GACTTGTTGA
  ACACAAGCAC ATGTCCAAAG CCATGAAACT CAATACTCTG TTCTGATTCT TACATTAACC
  AAGATCCAAA AAGCTGAATT TCTGATTATT ACTGTTAAAC CATGAGAACA ATTATCAACT
  TTATTTCTAG TGTTCTATCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52021357	NES15034506	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38204570					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52021357	NES15034506	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58808491 () rs orientation: forward

Symbol	Name	Function Class
Neo1	neogenin	within coordinates
Rr196035	regulatory region 196035	1110 bp proximal
Rr212064	regulatory region 212064	1990 bp proximal