rs38205810 SNP Detail

Summary

• ID
  rs38205810
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:129201537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCTTGGC TGGCCGGATG GAGAGAGAGC
  TGCCCCGAAT GGGGGCGCCT CCCGCACAGA CTTTCATAGC CAGGCACCTT CCCTCGTCCC
  TTCTTCCAGC TAGTCGCGGA ACTTGGAACC GGAGCCTTTG GCTCTGGGCT GCGGGAATGA
  Y
  TGGCTGCTGG GGTGTAGAAT GCTTGGATCC TCTAATCCGG AGGGCAGGCA GGGACACCCC
  GCGACTTGGG CATAGGTCTC AGGCAATTGG ACTGAACACA CATGGGGTGG GTTCTAGCTT
  GCTTTGTGGG GAACCTATGA AAGGAACCGG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51361758	NES14480925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		C	C		C
ss319968993	CHEV_1_131170377	CHEVERUD	SCREENING_POP	f	SNP										C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38205810					SNP	T	T	T	T	T	T	T	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51361758	NES14480925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:129201537 () rs orientation: forward

Symbol	Name	Function Class
Cpgi699	CpG island 699	within coordinates
Rr28456	regulatory region 28456	within coordinates
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8548	transcription start site region 8548	330 bp downstream
Tssr8549	transcription start site region 8549	318 bp downstream
Tssr8550	transcription start site region 8550	302 bp downstream