rs38205819 SNP Detail

Summary

• ID
  rs38205819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113418945 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACTCCTCC TGTTCCTGCC
  TCCACCTTTC ACGTTGAGGA GATTACAAAT ATTCACAGCC ATCTTTGTTC CAGTTAGCCC
  TCAGGACGCA GGGTCTCAGA CTATGGAGAG CATTGCAGGG AGGAAGAGAT GCCTCTTTAC
  TGCTTCAGCC TCTGAGTGAC GCCTCTCAGC ATTGACCACC CTATACTTTT CGTTGTATAA
  Y
  GTCTTTGCTC TGGACCCTAA CCCCAAGGTT GTGTGGAGCT TCAGGAAATA TAGATGTGCA
  ACAAGCCACT GGGCAAAGAT GCCAAGTCTA GTTAGGTATG GTTTAAGACT ATAATCACGC
  CTTGGGAGAT TGAAGCAAAA AAGACCGTCA AGAGTTCGAG GCCAGCATGA AGCACATGAA
  GCCCTGTCTC AAGAATTACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51841491	NES14768194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38205819					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51841491	NES14768194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113418945 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17844	CpG island 17844	398 bp proximal
Gm43928	predicted gene, 43928	1090 bp upstream
Jagn1	jagunal homolog 1	585 bp upstream
Rr132170	regulatory region 132170	345 bp distal
Rr145547	regulatory region 145547	55 bp proximal
Rr146999	regulatory region 146999	1946 bp distal
Rr399832	regulatory region 399832	360 bp upstream
Tssr58212	transcription start site region 58212	587 bp upstream
Tssr58213	transcription start site region 58213	644 bp upstream