rs38206231 SNP Detail

Summary

• ID
  rs38206231
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5899398 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTCCAT GACCCCTCTG
  GTGCTTGCTC ACAAACGGCC CTGCTTCCTA TAGTCCTTGA ATTGCATGTC CTTTCCCAGC
  CTCCCCCCTA GGAACCAGTT CCTGTAGGGC CATCTGCTGG TGTCGTATTT CCCTTCCCCC
  TCCTCTGGGA CCAGCACACA GGTCACTCTT CAATGAGAAC ATCCTCAGGC TAGGACCTGC
  Y
  TGCCACCACA GGGACCCCAG CTTGCTCCAC ACGGGCTCAC TAGGCTGTCC TTGAGCCTTC
  TACAACCTGG CTTTGGTCTG AGTGCCATCC TTGAGCAATC ACAGAGGTTG GCCCGGCTTC
  TGCCAGCTGC ACAGTGGGTG GCGTGACACC CCCTTGCTGA TCTTGACCTT GTATAGGAGG
  GCCGTGCTCA TTGGCTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
ss50577064	NES13648182	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	WSB/EiJ
rs38206231					SNP	T	T	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577064	NES13648182	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5899398 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	1604 bp downstream
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59609	predicted gene, 59609	956 bp upstream
Gm59610	predicted gene, 59610	127 bp upstream
Rr370436	regulatory region 370436	within coordinates
Tssr154520	transcription start site region 154520	848 bp downstream
Tssr154521	transcription start site region 154521	702 bp downstream
Tssr157783	transcription start site region 157783	1246 bp upstream
Tssr157784	transcription start site region 157784	573 bp downstream
Tssr157785	transcription start site region 157785	634 bp downstream