rs38207362 SNP Detail

Summary

• ID
  rs38207362
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5540585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCGGGAGAGG CCGCGTTCAG TCGGATCCCG GCAGCAGCTG CGGCGGCTCA
  S
  GTCTTCAGTT GCTCTTTCTG TCTCCCTTTC GTTTCCGGAA ACATGGTGAG           
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss50578862	NES13652070	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs38207362					SNP	G	G	G	G	G	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50578862	NES13652070	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5540585 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	1359 bp upstream
Cfl1	cofilin 1, non-muscle	within coordinates
Cpgi10454	CpG island 10454	1078 bp distal
Cpgi10455	CpG island 10455	within coordinates
Gm59148	predicted gene, 59148	616 bp downstream
Rr370433	regulatory region 370433	813 bp upstream
Rr405805	regulatory region 405805	1257 bp downstream
Rr405806	regulatory region 405806	83 bp downstream
Tssr154437	transcription start site region 154437	1196 bp downstream
Tssr154438	transcription start site region 154438	70 bp downstream
Tssr154439	transcription start site region 154439	32 bp downstream
Tssr154440	transcription start site region 154440	within coordinates
Tssr157606	transcription start site region 157606	1607 bp upstream
Tssr157607	transcription start site region 157607	1585 bp upstream
Tssr157608	transcription start site region 157608	1499 bp upstream
Tssr157609	transcription start site region 157609	1466 bp upstream