rs38208084 SNP Detail

Summary

• ID
  rs38208084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80451927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGTAAAAC TTCTTACAAA
  CACTTATTTC TGCAAAATAA TGTGTTTCTG TATGTGGAGC TCTGCAAAAT ATATGTTTTT
  CTGGAGAAAA AGGACCCAAG CCAAGGGCTG GTATGGGGCG GGTCCAAGTC ACATGAGGTC
  ATTAAGCTCC GCCTCCAGAG CAGCGGCCAT CTCATCTGCT TCTGAACTGC TGCCCTCCTC
  R
  TCATCGTTGC TGGACTCCCC GCTGGACTCG CTGGCAGCGT CTTCCTCATT TAGTTTCCTC
  TTGTGGCCTC TGAAGAGAGA AGAGAAGCAG GGCCACCATG AGACTCTGGC AAGCATGCAG
  GCCCTTAGTC ATCTCAGCAC AAAACCAATG TCATGGTCAC TGCCTCAGGA GGGCATGTGA
  TGAGGGCACA CTGTGCACCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50523582	NES13681191	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38208084					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50523582	NES13681191	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80451927 () rs orientation: forward

Symbol	Name	Function Class
Ctdp1	CTD phosphatase subunit 1	within coordinates