rs38208686 SNP Detail

Summary

• ID
  rs38208686
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:61333830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAAGAA GACATGCCAT
  TTTCTGATGC ATATAGAGAT TAATGTGATT TCTACTGTCA GGAATATATT ATTCAAAATA
  ATACTGGTTC ATGAATATCC AGAATATATA ACAGAGGCCT GCTCTCTAAA ATCAGAATGA
  AAATAATTAG AAATCTTAGG ACTCAAGATA TCTACGAGTA CAAGATCACA ATGAAAATTA
  Y
  TGTATCCATT TCTTCCTTTA TATTGCGTTT TAACCAGCTG GAGATGATCT GGACATGATC
  TATTGATTTC TGTAAAGGGT TCCGGATTCT AAAGAGCTGT TATATAGCAA AGAACTGATG
  TGGAAGAATA TCAGCCAAGA AAATCTAGTA AAGGACAAGA GCAATAACAA AATAACAAAA
  TAAACAACTG TCTCTTTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51490030	NES13960067	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	C		C	T	C	C	C
ss144742864	ENSMUSSNP2577230	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38208686					SNP	C	T	C	C	C	C	C	C	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51490030	NES13960067	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:61333830 () rs orientation: forward

Symbol	Name	Function Class
Gm72252	predicted gene, 72252	261 bp downstream
Mir344d-1	microRNA 344d-1	890 bp upstream
Mir344d-2	microRNA 344d-2	1190 bp downstream