rs38209338 SNP Detail

Summary

• ID
  rs38209338
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5901121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGT GAGCCCAAGT CTTCCCAGAC
  S
  TGGTTCCTAT GGAGACCTGG AGACC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss50577052	NES13648065	PERLEGEN	MM_PANEL2	f	SNP	C	C		C		G
ss325717632	CHEV_19_5851093	CHEVERUD	SCREENING_POP	f	SNP			G		C
SNP Consensus Information
SNP					Consensus Type	AKR/J	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs38209338					SNP	C	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577052	NES13648065	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5901121 () rs orientation: forward

Symbol	Name	Function Class
Frmd8	FERM domain containing 8	within coordinates
Frmd8os	FERM domain containing 8, opposite strand	within coordinates
Gm59610	predicted gene, 59610	1850 bp upstream
Rr370436	regulatory region 370436	32 bp downstream
Tssr157784	transcription start site region 157784	1132 bp upstream
Tssr157785	transcription start site region 157785	1079 bp upstream