rs38210757 SNP Detail

Summary

• ID
  rs38210757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:47954894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTATAAG CAGGTAGCGT
  GTCAACACTG AAGTCCATTT CAACCAATGT GACCACGATG TCCAACAGTG TGGGTTTGGT
  TCTGGCTGTG TGTTCGCAGT ATGACTTGGC ACCTCTCCGG ATTTCTGAGA TGTAGCTAAA
  CAGCATTTCC CTTAAACCCC GCCTCTTTCA GCAAGGAGCT CACAACTACT TGCAGGGCCT
  Y
  CCTCTTGGCC TGATGGTAGT TATCAGCAGG ATTAGTGGTC TCATTCTGGA GCCACAAGGC
  CCTGCCTCCA TGTCAGCCAT CTTGCTCTCA AGGAATGTGA GTCTCTGATA TTCTTTTCAT
  TCCTCTGTTG TTTTGTTCTG TGGTTTTGTA CTTTTTGTTG TTAGAATCAT TCAGGATTGA
  ATGTTAAACT CACGTAGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss51246474	NES14286111	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	T	T	C	T	C
ss149077372	ENSMUSSNP6506157	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs38210757					SNP	C	C	T	T	T	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51246474	NES14286111	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:47954894 () rs orientation: forward

Symbol	Name	Function Class
Gm19206	predicted gene, 19206	within coordinates
Rr371240	regulatory region 371240	35 bp downstream
Tssr6618	transcription start site region 6618	1703 bp upstream