rs38211371 SNP Detail

Summary

• ID
  rs38211371
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:22205402 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTGGAG ATTGTCCAAT
  TACTGTATAG TGAGTGCTTA GAAGTTGTTT TTACCTGGTT TGGGTTGTCT TCTGTTTCTT
  TTCTTTTTTA AACAACTGTC TGTGGATCTT CTTTGGACAT CCAATAGAAT TCTGGGGTGA
  ACCCATCTGG GCGGGGCTTC TTTGTAGAAG GCTTCATCAT TGCTTCCAGT CCCGTATTTG
  W
  TATGAGGCAG TTTAACTTGT GGCCTGTTTT AGAGATGCCT CCATGGGCTG TGAAATATCA
  GATCTATTTG ATGTACACTG TTATTTAATT CTGTTGTTTC TGTTTAATTT TTTGTGTAGA
  TGTCCTGTCT CCTGGAGAAA GTGGTGTTTT GAGTGGAGTT GACCTTTGTT TTTAAGGACA
  GTGGTATGCA TTTTATGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50651027	NES14032272	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38211371					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50651027	NES14032272	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:22205402 () rs orientation: forward

Symbol	Name	Function Class
Gm18225	predicted gene, 18225	1840 bp downstream
Gm48627	predicted gene, 48627	116 bp downstream
Rr675181	regulatory region 675181	1562 bp proximal
Zfp810	zinc finger protein 810	within coordinates