rs38211802 SNP Detail

Summary

• ID
  rs38211802
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:26679646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTAATCC CACAGACTTT
  TGCTATACAA GTCCATACTT TATTTCCAAG GAAATGTGGA TGACAGGAAA TCTTATAACA
  TAGGCTTAGG CAGTATATGC ATTTTAAATC TGGAGTTTAA ATTACGATCA TCTCTCAGCA
  TGTGGAGTTC ATAGGACTAT AGACCTGGGA CGTGTTTTAA CAGGATTGTG CCCAGGCAGG
  S
  CTAAAACTGA GAGCCAGAAC ACTGGTTTCC TGTCGTCAGT TATAAGGTCC ATCAACTAGT
  GATATCCAAG AGAAGCCTCA CCAATCACAG ATGCTCATGT GTTGCTCGTA ATCTCTGGTT
  GTCTAGTTTA TACAGTCTAT GAACTAAGTA CGTAAGACTT TAATAAGAGA TGGAAGTACA
  AGTCTGTGAA AATGCATGGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51442662	NES14434699	PERLEGEN	MM_PANEL2	f	SNP	C		G	G	C	C	G	C	C	C	C	C	C	C	C	C
ss134696773	ENSMUSSNP1385386	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38211802					SNP	C	C	G	G	C	C	G	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51442662	NES14434699	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:26679646 () rs orientation: forward

Symbol	Name	Function Class
Gm55656	predicted gene, 55656	688 bp downstream
Gm65182	predicted gene, 65182	within coordinates