rs38211927 SNP Detail

Summary

• ID
  rs38211927
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62314953 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTATTGCA TTTAATCCTT
  CCCACAATTC CATGGTGGTA TTTTTAGCTC GATTCTCCAA TGGGATCAAA TTCTCTCCAT
  CTCTAAGGGG GTGTGCTTGC AGATTTGAAA TGGGGAGAGA GGGAGAGAGA GAGCGCCAGC
  CATTTTCATT GTGATGAGTG AGAATCAAAT TCTATTGCTA CCGTAAGTGC TGTTACATAG
  Y
  TAAATATCAG ACAAATGTGA GTTTGTCAGT GAACTTTGGG CCATTTTTGG GGGGGAGGCA
  GGGTTTCTCT GTGGAGCCCC AGCTGTCCTG GAATTCACTC TGTAGACCAG GCTGGCCTCG
  AACTCAGAAA TCCGACTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGCG TGGGCCACCA
  CTGGCCGGAA CTTTGGGTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss50422428	NES13457361	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	C		C
ss325649295	CHEV_18_62341536	CHEVERUD	SCREENING_POP	f	SNP									C			T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs38211927					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50422428	NES13457361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62314953 () rs orientation: forward

Symbol	Name	Function Class
Adrb2	adrenergic receptor, beta 2	1923 bp upstream
Cpgi10125	CpG island 10125	1262 bp distal
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539066	regulatory region 539066	1677 bp distal
Rr539067	regulatory region 539067	1057 bp distal
Rr539068	regulatory region 539068	1825 bp proximal
Rr539069	regulatory region 539069	1985 bp proximal
Tssr151487	transcription start site region 151487	1700 bp downstream
Tssr151488	transcription start site region 151488	1044 bp upstream
Tssr153623	transcription start site region 153623	1896 bp upstream