rs38216189 SNP Detail

Summary

• ID
  rs38216189
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:143280611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCCCATC ACTCCCATTA
  ACTGGATGGA GACACAGCTC ATCTTTTGGC CTTGTATGAG TATTGGGTAA ACAACATTTA
  CTTTTCTCAC AGATGGTCGA AATGACTGAT GAAGCCATGG CGCGCCTTTG TTTGGGTTGC
  TCCCTTAGCA AGGTCTGAGA TGACATAGTT TGTTTGGGAG GCGCTCCCTG CAAGCAAGAT
  W
  GGACACCTGA GTGGGTCAGA GGAGAGGGAG AGGAGAGGTG TTTTGTTGTG GCTGCTGATG
  GAGGTGATGG TGACTGTATC TTATTGGGGC ATTACAGAAG CAAGTACAGA AGCAAGCAGT
  CTCCATGCTG GGATGGTAAC TTGCTTTCTG AACTCTCCAA ATGCCCCCGT GTGTGAGTCA
  AACAGACACT GTCTGTGGGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss51458628	NES13997514	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	A	T	T	T	A		T	T	T
ss322052268	CHEV_6_143283405	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs38216189					SNP	T	T	T	T	A	T	T	T	A	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51458628	NES13997514	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:143280611 () rs orientation: forward

Symbol	Name	Function Class
Rr380238	regulatory region 380238	1577 bp upstream