rs38217574 SNP Detail

Summary

• ID
  rs38217574
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73968173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTAGAAC AAGGATCAGT
  GTTCTGGTCT TCTCCAGGGA CGTTATCATA TGAAGGAGGT GGATGTCATT GCCACCACCT
  AGGACCCTTG CCACCATCTT TGTTGCCTCA GAGAAACAAG ATCTGAGCAC AAATGCCTAG
  CTGCCACAAC CACAAAATTC ACCAAAGCCA GCCAGGGAAA TGCTGCCAAC CTGGGAGAGC
  Y
  AGGCCCTGCA GCCCTTGAGG GCCAAGACCA GTGACCTAAG TAGGAGAGCC CCTTCCCAGG
  TTCCTCAGGA CAGGTGGATG AAGGAACGTT GAGACACATA AATTAATAGC TTGCTCCCTC
  AACTGGAGGA AAACCTGGAA AGAGGGAGTT ACCTGGGGTG TCGAGAACAC ACTCCATAGA
  GGCTCCCCAC CATCCACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51276638	NES14517830	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38217574					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276638	NES14517830	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73968173 () rs orientation: forward

Symbol	Name	Function Class
Rr34543	regulatory region 34543	1974 bp distal
Rr34544	regulatory region 34544	within coordinates
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	518 bp upstream
Tssr12216	transcription start site region 12216	485 bp upstream
Tssr12217	transcription start site region 12217	303 bp downstream
Tssr12218	transcription start site region 12218	1702 bp downstream
Tssr12219	transcription start site region 12219	1771 bp downstream
Tssr12220	transcription start site region 12220	1795 bp downstream