rs38219319 SNP Detail

Summary

• ID
  rs38219319
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122035181 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACACACA GAAGCTGTCA GAAGTACACG TCTAAAGAAA
  CTGTGCTGTG CTTGGTAAAC ACAAATTTTA AAGATTTGGC CTCAATATTT AAGAATATGG
  R
  ACTGTTTTCA CTTCCCCTGC AGAGAGAGAC ATCACAGCAG TAAAGTGAGT GAAGGTCTTG
  TCCTGTACCT GGGCAGTGTA TATATTTTTC AGGAAGAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss51021020	NES13905838	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A		A	A		A	A		A
ss135737694	ENSMUSSNP5061373	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A				G
ss320909857	CHEV_3_121944450	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38219319					SNP	G	G	A	A	A	A	G	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51021020	NES13905838	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122035181 () rs orientation: forward

Symbol	Name	Function Class
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1572 bp upstream
Rr375675	regulatory region 375675	1228 bp upstream
Rr584261	regulatory region 584261	1210 bp proximal
Rr584262	regulatory region 584262	1583 bp proximal
Rr584263	regulatory region 584263	1666 bp proximal
Tssr31477	transcription start site region 31477	1571 bp upstream
Tssr35442	transcription start site region 35442	1729 bp upstream