rs38220178 SNP Detail

Summary

• ID
  rs38220178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:109678795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCAATATT TGGCACCCAG
  CCCAGCCTTA CAGGGCATCC TGGAAGTCAT AGTGGCATTA AACATGAGTT TGTGGCCATT
  GCCACACATG CCGATTGCTG GTAGTTTGTG ACACTCATTG AGAAGGCATT TTGGAGGTAA
  CACCAAATTA AGTAAAGTGA GCTGGAATCA GCCAGCGTTA CCTCAAGGTA TTTGAAGATG
  Y
  GGTTGACCAT GGTGTGTACG CTTTATTTAT GACGTAGGAC ACATGGTCTA CTTCTTCTCA
  ATATCACATC TCGCCTTGGA AGACTTCCAG GAGGTGACAT CTGCTTTGAG GAAGAGCCAG
  TGTCCCGGTC TTCCTACTGC TGCTGCTTGG TACTTGGAGA GAGGTGGTCC GTGGCGCGTT
  CGCTTCATTT ATGGCGCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51053021	NES14374815	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38220178					SNP	C	C	C	C	C	C	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51053021	NES14374815	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:109678795 () rs orientation: forward

Symbol	Name	Function Class
B830012L14Rik	RIKEN cDNA B830012L14 gene	within coordinates
Gm54365	predicted gene, 54365	471 bp upstream
Mir299a	microRNA 299a	1661 bp downstream
Mir299b	microRNA 299b	1668 bp upstream
Mir323	microRNA 323	147 bp upstream
Mir329	microRNA 329	1120 bp upstream
Mir380	microRNA 380	498 bp downstream
Mir758	microRNA 758	449 bp upstream
Mir1197	microRNA 1197	within coordinates
Mirc6	microRNA cluster 6, including Mir379 through Mir544	within coordinates
Mirc36	microRNA cluster 36, including Mir379 through Mir3072	within coordinates
Mirc44	microRNA cluster 44, including Mir1197 through Mir758	within coordinates
Rr262534	regulatory region 262534	within coordinates