rs38220776 SNP Detail

Summary

• ID
  rs38220776
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40276872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGTAGAG TGAACGAATG
  CATAGTTAAA TTAAAACAGA ATATAGTGGG AACTTGAAAA GAACTGTAGA AGCATTGTAT
  TCTGAGGTTC ATCAGCCCAA AAGGGGACAG GGAAATCTCA AGTGTGATAC TGCTATCACC
  TTAGAGATGA GGGTATGTCC CGCTAAGGTC ACACCCTTCC TTGTGATTAA ATACCAGAGC
  W
  AGTTCCAGCG TCCAGTGAAG TAGTCAAGCA ACTATGCCCA CGTGTGGCAA GATGGAAAAG
  TTCTAGGAAT GAGGTCAAAA CAGAGCTTGA AAGGTGGCTC ACGTGAAAGA AGGGTAGAGC
  TGACTGCAAG TGACCCTGAG TTCTCAGAAG GCAAAGACGG AAGAGATAAT AATCAGAGTT
  CTTCAGCTCC ATCTAGAATG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50677913	NES13999793	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38220776					SNP	T	T	T	T	T	A	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677913	NES13999793	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40276872 () rs orientation: forward

Symbol	Name	Function Class
Gm48114	predicted gene, 48114	within coordinates
Gm68184	predicted gene, 68184	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr194718	regulatory region 194718	within coordinates
Rr200102	regulatory region 200102	872 bp distal
Rr200103	regulatory region 200103	472 bp distal