rs38221512 SNP Detail

Summary

• ID
  rs38221512
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9961498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCTCCC AATGCAGGAT
  ACTCTAGCAC CCTACCTCTT AGACAAGTAG ATTTGGGCTT GGCTTAAATT TTTTTCTCTG
  CACTAATACC GAGCCGTAGA ACACTTGATA AAGCCAAGTC CCAAGGTTTG CCTTCCCATC
  CTTACTGAAC TTTTAAAAGG CCGAGTAGGA TGGCTCACAG CCTTTGCATA CAGCCATTGC
  R
  GTGCCTTGCA GTGGAGATCA GTAACATGTA CCCTTTCCAC TTTCAGTCTT GTTATTTTGA
  CCGAGATGAT GTGGCTCTGA AGAACTTTGC CAAATACTTT CTCCACCAAT CTCATGAGGA
  GAGGGAGCAT GCCGAGAAAC TGATGAAGCT GCAGAACCAG CGAGGTGGCC GAATCTTCCT
  GCAGGATATA AAGGTAAGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50605210	NES13645668	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38221512					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50605210	NES13645668	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9961498 () rs orientation: forward

Symbol	Name	Function Class
Best1	bestrophin 1	1040 bp downstream
Cpgi10595	CpG island 10595	749 bp distal
Fth1	ferritin heavy polypeptide 1	within coordinates
Gm36913	predicted gene, 36913	1614 bp upstream
Rr543964	regulatory region 543964	1627 bp distal
Rr543965	regulatory region 543965	1401 bp distal
Rr543966	regulatory region 543966	132 bp distal
Rr543967	regulatory region 543967	197 bp proximal
Tssr155003	transcription start site region 155003	1423 bp downstream
Tssr155004	transcription start site region 155004	1282 bp downstream
Tssr155005	transcription start site region 155005	1016 bp downstream
Tssr155006	transcription start site region 155006	44 bp upstream
Tssr155007	transcription start site region 155007	113 bp upstream
Tssr155008	transcription start site region 155008	423 bp upstream
Tssr155009	transcription start site region 155009	769 bp upstream
Tssr155010	transcription start site region 155010	959 bp upstream
Tssr158131	transcription start site region 158131	1699 bp upstream
Tssr158132	transcription start site region 158132	1685 bp upstream
Tssr158133	transcription start site region 158133	1628 bp upstream
Tssr158134	transcription start site region 158134	1603 bp upstream
Tssr158135	transcription start site region 158135	1567 bp upstream
Tssr158136	transcription start site region 158136	1194 bp upstream
Tssr158137	transcription start site region 158137	85 bp downstream
Tssr158138	transcription start site region 158138	131 bp downstream
Tssr158139	transcription start site region 158139	451 bp downstream
Tssr158140	transcription start site region 158140	672 bp downstream
Tssr158141	transcription start site region 158141	723 bp downstream
Tssr158142	transcription start site region 158142	739 bp downstream
Tssr158143	transcription start site region 158143	798 bp downstream
Tssr158144	transcription start site region 158144	955 bp downstream