rs38221744 SNP Detail

Summary

• ID
  rs38221744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131016573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGGCTTC TGCTCACCTC
  TCCAGTTCCT GTCTGGCTCT TTCTATTGAT GTTTTTTTTT TTTTTTTTCA AACATGGTTT
  TGTTGTTTGT TTGACTAAGA CCTAACTCTC TCAATGCATG CCATAACTCT GTGCATACAT
  ATAAAAGCCA AGGAAAAGTA CCTATCCTGG GGTATATTTC AGGGTTTTTT GGTTGGCACC
  Y
  GGCAATCCAT TTTTAGCCAA CATGCACATA AGGAAATGGG TAAGGTAAAT GTCTAGGTCA
  GACATTGCTG CCTGTTAGCA GAAGGCACAG TCTTCTATGG CCTGTCTCCG GCAGCTTCAC
  ACTAATGGCA TCTCATTTGT TCCCTCTCGA GGTGGTAAGA GAAGCTCCTT CCCAACGTGC
  AAAGCCAAGG CAGCGACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51634208	NES14648978	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38221744					SNP	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51634208	NES14648978	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131016573 () rs orientation: forward

Symbol	Name	Function Class
Lef1	lymphoid enhancer binding factor 1	within coordinates
Tssr31723	transcription start site region 31723	131 bp downstream
Tssr31724	transcription start site region 31724	904 bp upstream
Tssr31725	transcription start site region 31725	1014 bp upstream