rs38223881 SNP Detail

Summary

• ID
  rs38223881
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88861382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCTGTC TGAACATTCT
  CAGACTAGGA CCGCACAAAA CCCAGCTCCT TCCATAGAAA AACCCATGCA ACATCTGGGT
  CCTCAAGTAC TGTGTGCACT CAGGGCCCAG TGATGCTTTA AGCATCCCAA TTGCTTATCT
  ATCCGCAAGA CTGTGTACAA GTGTCCTGGC ACCCCACATG GCACTGCTTC ACCCTGGGCT
  W
  GCGTGGCTCC GCTCTGTAGC TACACCCAAC TTATCCCTTC CCGTGGTCCC CCATAGTCCC
  CATAGTCCCA TGGCTTCTGT AGTCTTTCCC AATCCAAGGT CTTGACCCCA GCTGTGGCCA
  GAACTCTTGT TAGTCACTCC ATAGAGCTAC CCTGAAGCAT GAGGTTGGCC TCCAGCCTTC
  ACAGATCACG CATGTGCAGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51740358	NES14560032	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38223881					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51740358	NES14560032	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88861382 () rs orientation: forward

Symbol	Name	Function Class
Mlc1	megalencephalic leukoencephalopathy with subcortical cysts 1 homolog (human)	within coordinates
Rr507763	regulatory region 507763	1191 bp proximal
Rr507764	regulatory region 507764	1818 bp proximal
Tssr135826	transcription start site region 135826	665 bp downstream
Tssr135827	transcription start site region 135827	744 bp downstream
Tssr135828	transcription start site region 135828	1363 bp downstream
Tssr135829	transcription start site region 135829	1388 bp downstream
Tssr135830	transcription start site region 135830	1594 bp downstream
Tssr135831	transcription start site region 135831	1779 bp downstream