rs38224841 SNP Detail

Summary

• ID
  rs38224841
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:33897175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATGAAAGGA GGAGCATAAA
  AACTACAGGA CAAGAACCTT AAATTCAAAT GCTAACTGTA GAGCCAGCAG GATCGCTCTC
  CTAAATACCT CTTATACAAT GTAATAATAT ATTAATTATA CAGTGTCTCC TGCCCATCTC
  ATCTCTAGTT CAACAAGACA CCCATCAGGT TGGTGGGCTG GCTCCAAACC TTCAATTGGC
  R
  GCTATGACTC GGGCACCAGC AGTGATCTTT TATCTGTCCT AATATTGATG GTCCTTAAGG
  GGAAATGCCC AATCCTAACC AGAGGGGAGA GCAGAGCAAA GCAGAGCAGA GTAGAGTAGA
  GCAGAGCAGA GCAGAGCAGA GCAGAGCAGA GCAGAGCAGA GCAGAGCAGA GCAGAGCATT
  CCAAACGTTC CAGTCTTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51450288	NES14437882	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38224841					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51450288	NES14437882	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:33897175 () rs orientation: forward

Symbol	Name	Function Class
Ccdc39	coiled-coil domain containing 39	within coordinates
Rr575077	regulatory region 575077	1265 bp proximal
Tssr32964	transcription start site region 32964	1186 bp downstream
Tssr32965	transcription start site region 32965	1229 bp downstream