rs38224854 SNP Detail

Summary

• ID
  rs38224854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:73967566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTTGCCCT TACTCCCCAG CCTGAGGCGA
  GCTTTAAGGA GCTTTCAGAA CTCTCTGCTC CCCTAGGCTC TGCCTCTGCA AAAGGCCACT
  AGCTCTCCCT CCAAGACTGT GCTTGTTCAA GGCTGGCCTC CCCTTTGCAG TCTTATTTCC
  R
  CCCAGCCCTA GCAGGGTCCC CAGATGCTCC TAGAGCAGCC CCAAAGCCAT CACCTTCGCC
  CACATCTCAG GAAAGCACCC AGCTTGCTCG TTAAGCAATA CCCAGTGCCA GCTACTGCAC
  ACTCACCAGC CCCTTCCTGC CAAGACACCC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51276646	NES14517821	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	A	G	G		G
ss319792982	CHEV_1_73974981	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38224854					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51276646	NES14517821	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:73967566 () rs orientation: forward

Symbol	Name	Function Class
Tns1	tensin 1	within coordinates
Tssr117	transcription start site region 117	88 bp downstream
Tssr12216	transcription start site region 12216	97 bp downstream
Tssr12217	transcription start site region 12217	910 bp downstream