rs38226501 SNP Detail

Summary

• ID
  rs38226501
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:97874462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCACAGA GGGCTTCCTG
  CCTGGGATAG CCTCTCCTCT CCTATGCTAG TTTCTACGAA TACTTCTATA AGAGTTAGTG
  AGCTTGCCAG CATCTTTATT GCCTCTGAAT GAGGAAGTGG ACAAGCCAGT ATGGTATACG
  CTCCTCCCCC ATCCCTGCCT CTCAGCTTGT CTCCCACATG CCCCCACGAC TCAAGCCTCT
  R
  ATGAGTCCCT TCACTACAGG AAAGTGACAT TTGTCACAGG CTGACCTCAG CCCCACTCAC
  CGTGCAGCCA TCCTTCAGGG CAGTGTATGT GAACCTGCTG TTGCCCTCGG CCCTCATCTC
  TACATCATTG GAGCCCTGGA TGAGCAAGGC CTTCTTGAGG TTGCCAGCCG CTTCGTCCAG
  GTAGGCGATG CTGTTCTTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51763554	NES14551334	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38226501					SNP	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51763554	NES14551334	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97874462 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Col2a1	collagen, type II, alpha 1			Intron
				Noncoding-Transcript-Variant
Rr509000	regulatory region 509000			230 bp proximal
Tssr4707	transcription start site region 4707			307 bp downstream
Tssr132910	transcription start site region 132910			951 bp downstream
Tssr136189	transcription start site region 136189			894 bp upstream
Tssr136190	transcription start site region 136190			864 bp upstream
Tssr136191	transcription start site region 136191			660 bp upstream
Tssr136192	transcription start site region 136192			530 bp upstream
Tssr136193	transcription start site region 136193			513 bp upstream
Tssr136194	transcription start site region 136194			462 bp upstream
Tssr136195	transcription start site region 136195			439 bp upstream
Tssr136196	transcription start site region 136196			427 bp upstream
Tssr136197	transcription start site region 136197			409 bp upstream
Tssr136198	transcription start site region 136198			97 bp downstream
Tssr136199	transcription start site region 136199			143 bp downstream
Tssr136200	transcription start site region 136200			161 bp downstream
Tssr136201	transcription start site region 136201			217 bp downstream
Tssr136202	transcription start site region 136202			271 bp downstream
Tssr136203	transcription start site region 136203			696 bp downstream
Tssr136204	transcription start site region 136204			789 bp downstream
Tssr136205	transcription start site region 136205			1252 bp downstream
Tssr136206	transcription start site region 136206			1291 bp downstream
Tssr136207	transcription start site region 136207			1321 bp downstream