TTGGGGACCT TAGTCTCCCG TGCGCAGCGG AGATCGCCGC GGCGTTTCTG AGATGCCCGG GAGAAAGGCG CGTCGGAACG CGCCAGTGAA CCCAACGCGG GCAGGTACCT AGCAGTTCGG CCCGCGGACA CCCAGGCAGG GATGGGGTTG AGGTCATACT CGGGACGGTT CAGCCCTTCG GGGCTCGGGC TAGAATGTAC R CGCCTGCATG TTCGGGCCAA ATCGGCTCCC GGGCTCGTGA CTTCGACTGG TCTAGAAAGT TCTTCAGGGC TTCTACCGAG ACTGTGGGCC TCTGGGAGAG TCCAGTCCAG CGTATCATTG GGATGCAGGT GCATCTTAGG CCTGATTCTC GTCTGATTCG TGGGTCTCTG ATTGCTCTAC CAGGGACCGG GAGGAGAGAA R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss50450324 | NES13440897 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
SNP Consensus Information | ||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
PWD/PhJ |
WSB/EiJ |
||||
rs38226935 | SNP | G | G | G | G | G | G | A | G | G | G | G | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss50450324 | NES13440897 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr18:66591980 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi10160 | CpG island 10160 | within coordinates | ||||||
Cpgi10161 | CpG island 10161 | 1945 bp proximal | ||||||
Pmaip1 | phorbol-12-myristate-13-acetate-induced protein 1 | within coordinates | ||||||
Rr405709 | regulatory region 405709 | 189 bp downstream | ||||||
Rr539737 | regulatory region 539737 | 306 bp distal | ||||||
Rr539738 | regulatory region 539738 | 497 bp distal | ||||||
Rr539739 | regulatory region 539739 | 443 bp distal | ||||||
Rr539740 | regulatory region 539740 | within coordinates | ||||||
Tssr151705 | transcription start site region 151705 | 305 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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