rs38227946 SNP Detail

Summary

• ID
  rs38227946
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:68734077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTGCTA ATGCACGTTG
  CTGTGCATCT GGGAGAACCC TTGTGTGGAA AACAGGAGCT CTTAGCAAAA ATCTTCCCTC
  CGTGCCCTTT TCTCTTCTCA AACATAGCCT GGGCAAGTAT AAGAGCGGCC ACTGAGGATG
  AAGATGCTGA TGGCCTCTAA CCACCGGCCT CTGCAGGTCT CCCTCCCATC TTCATCCTCA
  R
  TCTAAATTCT TGAGACAAAG TACAGTTTTC CAATCCTACC CTCCCCCCCC CCAACCAGCA
  GCTTTGGGAT AAAAACGAAA TGGGGTCTAC TTGATTTTGA AAAGTTTCCA TTTAAAGAAA
  AGGACAGATT CAGCTTTGCT GAAAATGACC GAAATAAAAT GTCTCCGACT CTGCTTTTCA
  CAAGGACTGA ATTTTTCTAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50732736	NES14244254	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38227946					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50732736	NES14244254	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68734077 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	within coordinates
Rr210394	regulatory region 210394	within coordinates
Rr383535	regulatory region 383535	901 bp upstream