rs38228730 SNP Detail

Summary

• ID
  rs38228730
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:32489586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTAGGACA ACCCCTAGAC
  TCATGAAGGA CACAGACCCT TAGCTCGCAA CAATGTCCTC CCCAAAGTGG GCTGTCTATT
  TCATATTAGA ACTGTCAAGT TTCTGTGGGA AAGGCTGGCC ATCACAGAGT CCTAGCATAA
  GACAGAAAAG GTAGATTCTC GGTCCCATAG CCTTAGAGGT GTGTGCTCTA TAAGCAGAGA
  K
  TTGCAGAGAC CCTTTGAAGT AGGCTACAAA GGGGGCCAGA GCCAGGATCA GTGGTGAGAA
  GCTACAGAAA TACAAATTAA ATCAAATTGG TTAACCCTCC TAGATGCCTT CCTAACAAAT
  TGGCCTCAGG TTAGACTCCT TGAGTCCCAG CACAACCTAA GACCCCAGCC ATATCTTTCT
  AGCTCTCTTA TGCCTAGGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51579753	NES14853444	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38228730					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51579753	NES14853444	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:32489586 () rs orientation: forward

Symbol	Name	Function Class
Plxna4	plexin A4	within coordinates
Plxna4os1	plexin A4, opposite strand 1	within coordinates
Rr628119	regulatory region 628119	1568 bp distal
Rr628120	regulatory region 628120	1252 bp distal
Rr628121	regulatory region 628121	265 bp distal
Tssr55474	transcription start site region 55474	1481 bp downstream
Tssr55475	transcription start site region 55475	1461 bp downstream