rs38229636 SNP Detail

Summary

• ID
  rs38229636
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:79516311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGGCAGCTC ATAAACACAT
  GTAACTTCTG CTACTGGGTT CCAAAGCTCT TAACACCCAA CACACACACA CACACACACA
  CACACACACG CACGCACGCA CGCACGCACG CACGCACGCA CGCACGCACG CACATGCACA
  CGTAAAACAC AGAGACAGTC TAAATGGTGT CTGTGTGTTT ACATCATTTC TAATTTGGAC
  M
  AGAATTGCTT TTATTTTTAT CACTTTTATT TACTCATGTC AGTGTCAATA TTTATGTGTG
  GGTGTGCATG CTTTGGTTGG TTTCTGGAGG TCACAGTAGC ATCAGGAGGT TGGTCCTCTC
  GGGTTATAGG GAAGAAACAC AAGTTGTTAG GCCTAAAGGC AAGTGCATTC ATCTGCTGAG
  CCATCGTTGG GAACGTGTAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51708349	NES14814376	PERLEGEN	MM_PANEL2	f	SNP	C	C	A	C	C	C	C	C	C		A	C	C		C
ss321835100	CHEV_6_79489322	CHEVERUD	SCREENING_POP	f	SNP										A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs38229636					SNP	C	C	A	C	C	C	C	C	C	A	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51708349	NES14814376	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:79516311 () rs orientation: forward

Symbol	Name	Function Class
Gm6261	predicted gene 6261	1880 bp upstream