rs38230553 SNP Detail

Summary

• ID
  rs38230553
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27835819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTTGAATG ATGTAGGAAG
  GACCGGTCCA CTGTGGGTAG CACCATCCCT AGGCACCAGG GCCTGGTCTA TATAAGAGAA
  CTAAAGAGTG AGCCAGTGAG CCAACCAGCA AGCAGTTATT CCTCATTATT TCTGCTTCAA
  GCCTGGCTTC CCTCACAGAT GAGTTGTAAT TTTCTCCCCC AAAGTTGCAT CTGACAAATG
  Y
  GCTGTGTCAC AGCAGCAGAA AGGAAAATAG CCCACTGCTA CCCAGTGATG GTGGTTTAAA
  GAGGCTGGCA GCCCTCTGCC GGATTTGTCA CCGTTTTGGT GCTTGTAGGT CTTGACTGGT
  TCTGCCCATA GCCTCCTGAC TCTTGCTTCC TCATGTCATG AACATGAATC CCACTGTTTC
  ACTGGCTTCC TACAGCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51887453	NES14907489	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38230553					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51887453	NES14907489	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27835819 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Gm21925	predicted gene, 21925	within coordinates
Gm38976	predicted gene, 38976	within coordinates
Rr644170	regulatory region 644170	1337 bp proximal
Rr644171	regulatory region 644171	1418 bp proximal
Tssr65385	transcription start site region 65385	1336 bp downstream
Tssr65386	transcription start site region 65386	710 bp upstream
Tssr65387	transcription start site region 65387	1039 bp upstream
Tssr65388	transcription start site region 65388	1136 bp upstream
Tssr65389	transcription start site region 65389	1192 bp upstream
Tssr71448	transcription start site region 71448	704 bp downstream
Tssr71449	transcription start site region 71449	714 bp downstream
Tssr71450	transcription start site region 71450	731 bp downstream
Tssr71451	transcription start site region 71451	1124 bp downstream