rs38231179 SNP Detail

Summary

• ID
  rs38231179
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:9110368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAGCAA CTGCAGAAGT
  TCCCTGATCT GCACTGCCTC AACTAGTGTG GAGGAGGGAC CCTGTTAGGC TATGGACCGT
  CACAGGAGGG ATCCTTTTAG GTTAGAGGTC ACCAGAGACC TAACCGAACC AGCCTCTTCA
  AGGAAAGGTT CTGGAAGTGT AGTCTGTCCG GAAGTCTAGA AACAACCCTG AAAGTGAACT
  S
  AAATGCCTCA GTCCACAGAC AGATTAACTT ACAAGAGTTT TCAGTAAGTA TCAGAGTGCC
  TGACAAAGGC TAGGAGACAG AGAAAACAGC TCCCCATGGC GGTCTCTCTG CTTGTCTCCC
  ACTTTCAGAT GCCTAAAGAT GAGTGATGCT GTAAAGAAGG AGGTCAAGAG GTTGAGCTGC
  CGAAGTGGGA CTGGTAACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50608114	NES13641743	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38231179					SNP	C	C	C	C	C	C	G	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50608114	NES13641743	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:9110368 () rs orientation: forward

Symbol	Name	Function Class
Asrgl1	asparaginase like 1	within coordinates
Cpgi10592	CpG island 10592	1680 bp proximal
Rr363785	regulatory region 363785	within coordinates