rs38231595 SNP Detail

Summary

• ID
  rs38231595
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:50845285 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACTTTAT ATTGCACATA
  GATGTTGCAG ATTACATTTT TTATTTAAAT AGATCCTTGT TTCCACTACT TTTCTTCTAT
  GTTATTGTCA GTCATAGAGA ATAAAGCACA GCTGTTTTAT GTATTTTTTT GAGTTTGTGC
  TGCACCCCCA TTGTTCACTC CAATTACCTG TTACCTCCGA AGTATCCCCA TGAGCACCAT
  Y
  ACCAGAGTAT GTTCATCTGG AGGCTTCTGA CATCCGTCTG AGTTGCTTGA AAATGTCAAT
  GCTTATCATC AGGCCAAGGT ACAATCTGCT TTCTCTACTA CATAACCACT TCTTATCTTT
  TTCAAATGAA AGGGAGTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTGGTTAGA
  CTCTTGAAGA CCCTAAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50863466	NES14174760	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		C
ss323299476	CHEV_10_50688995	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38231595					SNP	T	T	T	T	T	T	C	T	T	C	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50863466	NES14174760	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:50845285 () rs orientation: forward

Symbol	Name	Function Class
Sim1	single-minded family bHLH transcription factor 1	within coordinates
Tssr93227	transcription start site region 93227	172 bp upstream